com.pacbio.secondary.vis.svc.server.test

Class HDFServiceLocalTest

java.lang.Object

com.pacbio.secondary.vis.svc.server.test.HDFServiceLocalTest

public class HDFServiceLocalTest
extends java.lang.Object

Author:

mmilletti

Field Summary

Fields

Modifier and Type	Field and Description
protected static java.lang.String	CONTIG_ID
protected static int	ext_mode
protected static int	MAX_CONSENSUS_LENGHT_TEST
protected static int	MAX_COVERAGE
protected static boolean	PRINT_CONSENSUS_DETAILS
protected static boolean	PRINT_HEADER_DETAILS
protected static boolean	PRINT_KINETICS_DETAILS
protected static int	RANGE_START
protected static boolean	READ_CONSENSUS
protected static boolean	READ_HEADER
protected static boolean	READ_KINETICS

Constructor Summary

Constructors

Constructor and Description
HDFServiceLocalTest()

Method Summary

Methods

Modifier and Type	Method and Description
static void	main(java.lang.String[] args)
static void	testFile(HDFService service, java.lang.String abs_cmph5_url, java.lang.String ref_name, int ref_id, long ref_start, long ref_end)
static void	visitAllFiles(java.io.File dir, HDFService service, java.lang.String ref_name, int ref_id, long ref_start, long ref_end)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

READ_HEADER

protected static boolean READ_HEADER

PRINT_HEADER_DETAILS

protected static boolean PRINT_HEADER_DETAILS

READ_CONSENSUS

protected static boolean READ_CONSENSUS

PRINT_CONSENSUS_DETAILS

protected static boolean PRINT_CONSENSUS_DETAILS

READ_KINETICS

protected static boolean READ_KINETICS

PRINT_KINETICS_DETAILS

protected static boolean PRINT_KINETICS_DETAILS

CONTIG_ID

protected static java.lang.String CONTIG_ID

RANGE_START

protected static int RANGE_START

MAX_CONSENSUS_LENGHT_TEST

protected static int MAX_CONSENSUS_LENGHT_TEST

MAX_COVERAGE

protected static final int MAX_COVERAGE

See Also:

Constant Field Values

ext_mode

protected static int ext_mode

Constructor Detail

HDFServiceLocalTest

public HDFServiceLocalTest()

Method Detail

main

public static void main(java.lang.String[] args)

Parameters:

args -

testFile

public static void testFile(HDFService service,
            java.lang.String abs_cmph5_url,
            java.lang.String ref_name,
            int ref_id,
            long ref_start,
            long ref_end)

Parameters:

service -

abs_cmph5_url -

ref_name -

ref_id -

ref_start -

ref_end -

visitAllFiles

public static void visitAllFiles(java.io.File dir,
                 HDFService service,
                 java.lang.String ref_name,
                 int ref_id,
                 long ref_start,
                 long ref_end)