SMRT® View Web Services Validation

Version: 2.3.0, Build: September 30 2014 10:32 PM

Examining Server Configuration

Required Components

Found Apache-Axis (org.apache.axis2.transport.http.AxisServlet)
  at /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/apache-tomcat-7.0.23/webapps/smrtview/WEB-INF/lib/axis2-transport-http-1.5.2.jar
Found Jakarta-Commons Logging (org.apache.commons.logging.Log)
  at /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/apache-tomcat-7.0.23/webapps/smrtview/WEB-INF/lib/commons-logging-1.1.1.jar
Found Streaming API for XML (javax.xml.stream.XMLStreamReader)
  at an unknown location
Found Streaming API for XML implementation (org.codehaus.stax2.XMLStreamWriter2)
  at /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/apache-tomcat-7.0.23/webapps/smrtview/WEB-INF/lib/wstx-asl-3.2.9.jar

The core axis2 libraries are present.

Note: Even if everything this page probes for is present, there is no guarantee your Axis Service will work, because there are many configuration options that we do not check for. These tests are necessary but not sufficient

Examining Version Service

Found SMRT Analysis Version service. Axis2 is working properly.

Following output was produced while invoking SMRT Analysis Version service

SMRT Analysis 2.3.0.140936

Examining HTTP server and Servlet container

Servlet version3.0
Platform Apache Tomcat/7.0.23

Examining System Properties

         java.runtime.nameJava(TM) SE Runtime Environment 
         sun.boot.library.path/opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/lib/amd64 
         java.vm.version22.0-b10 
         shared.loader 
         java.vm.vendorOracle Corporation 
         java.vendor.urlhttp: //java.oracle.com/ 
         path.separator:  
         java.vm.nameJava HotSpot(TM) 64-Bit Server VM 
         tomcat.util.buf.StringCache.byte.enabledfalse 
         file.encoding.pkgsun.io 
         java.util.logging.config.file/opt/smrtanalysis/current/redist/tomcat/conf/logging.properties 
         user.countryUS 
         sun.java.launcherSUN_STANDARD 
         sun.os.patch.levelunknown 
         java.vm.specification.nameJava Virtual Machine Specification 
         user.dir/home/smrtanalysis 
         java.runtime.version1.7.0_02-b13 
         java.awt.graphicsenvsun.awt.X11GraphicsEnvironment 
         java.endorsed.dirs/opt/smrtanalysis/current/redist/tomcat/endorsed 
         os.archamd64 
         java.io.tmpdir/opt/smrtanalysis/current/redist/tomcat/temp 
         line.separator  
         java.vm.specification.vendorOracle Corporation 
         java.util.logging.managerorg.apache.juli.ClassLoaderLogManager 
         java.naming.factory.url.pkgsorg.apache.naming 
         os.nameLinux 
         sun.jnu.encodingANSI_X3.4-1968 
         java.library.path/opt/smrtanalysis/current/common/lib 
         tomcat.util.scan.DefaultJarScanner.jarsToSkipbootstrap.jar,commons-daemon.jar,tomcat-juli.jar,annotations-api.jar,el-api.jar,jsp-api.jar,servlet-api.jar,catalina.jar,catalina-ant.jar,catalina-ha.jar,catalina-tribes.jar,jasper.jar,jasper-el.jar,ecj-*.jar,tomcat-api.jar,tomcat-util.jar,tomcat-coyote.jar,tomcat-dbcp.jar,tomcat-i18n-en.jar,tomcat-i18n-es.jar,tomcat-i18n-fr.jar,tomcat-i18n-ja.jar,tomcat-juli-adapters.jar,catalina-jmx-remote.jar,catalina-ws.jar,tomcat-jdbc.jar,commons-beanutils*.jar,commons-codec*.jar,commons-collections*.jar,commons-dbcp*.jar,commons-digester*.jar,commons-fileupload*.jar,commons-httpclient*.jar,commons-io*.jar,commons-lang*.jar,commons-logging*.jar,commons-math*.jar,commons-pool*.jar,jstl.jar,geronimo-spec-jaxrpc*.jar,wsdl4j*.jar,ant.jar,ant-junit*.jar,aspectj*.jar,jmx.jar,h2*.jar,hibernate*.jar,httpclient*.jar,jmx-tools.jar,jta*.jar,log4j*.jar,mail*.jar,slf4j*.jar,xercesImpl.jar,xmlParserAPIs.jar,xml-apis.jar,dnsns.jar,ldapsec.jar,localedata.jar,sunjce_provider.jar,sunmscapi.jar,sunpkcs11.jar,jhall.jar,tools.jar,sunec.jar,zipfs.jar,apple_provider.jar,AppleScriptEngine.jar,CoreAudio.jar,dns_sd.jar,j3daudio.jar,j3dcore.jar,j3dutils.jar,jai_core.jar,jai_codec.jar,mlibwrapper_jai.jar,MRJToolkit.jar,vecmath.jar,junit.jar,junit-*.jar,ant-launcher.jar 
         java.specification.nameJava Platform API Specification 
         java.class.version51.0 
         sun.management.compilerHotSpot 64-Bit Tiered Compilers 
         os.version5.15.0-138-generic 
         user.home/home/smrtanalysis 
         user.timezoneAmerica/Mexico_City 
         catalina.useNamingtrue 
         java.awt.printerjobsun.print.PSPrinterJob 
         java.specification.version1.7 
         file.encodingANSI_X3.4-1968 
         catalina.home/opt/smrtanalysis/current/redist/tomcat 
         user.namesmrtanalysis 
         java.class.path/opt/smrtanalysis/current/redist/tomcat/bin/bootstrap.jar: /opt/smrtanalysis/current/redist/tomcat/bin/tomcat-juli.jar 
         java.naming.factory.initialorg.apache.naming.java.javaURLContextFactory 
         package.definitionsun.,java.,org.apache.catalina.,org.apache.coyote.,org.apache.tomcat.,org.apache.jasper. 
         java.vm.specification.version1.7 
         sun.arch.data.model64 
         java.home/opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre 
         sun.java.commandorg.apache.catalina.startup.Bootstrap start 
         java.specification.vendorOracle Corporation 
         user.languageen 
         awt.toolkitsun.awt.X11.XToolkit 
         java.vm.infomixed mode 
         java.version1.7.0_02 
         java.ext.dirs/opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/lib/ext: /usr/java/packages/lib/ext 
         sun.boot.class.path/opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/lib/resources.jar: /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/lib/rt.jar: /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/lib/sunrsasign.jar: /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/lib/jsse.jar: /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/lib/jce.jar: /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/lib/charsets.jar: /opt/smrtanalysis/install/smrtanalysis_2.3.0.140936/redist/jdk1.7.0_02/jre/classes 
         java.vendorOracle Corporation 
         server.loader 
         java.security.auth.login.config/opt/smrtanalysis/current/redist/tomcat/conf/kerb5.conf 
         catalina.base/opt/smrtanalysis/current/redist/tomcat 
         file.separator
         java.vendor.url.bughttp: //bugreport.sun.com/bugreport/ 
         common.loader${catalina.base}/lib,${catalina.base}/lib/*.jar,${catalina.home}/lib,${catalina.home}/lib/*.jar 
         sun.cpu.endianlittle 
         sun.io.unicode.encodingUnicodeLittle 
         package.accesssun.,org.apache.catalina.,org.apache.coyote.,org.apache.tomcat.,org.apache.jasper. 
         sun.cpu.isalist 

Copyright© 2010-2014 Pacific Biosciences